PoplarV1, Main, Exploration, bibRecord, 001A99

The phylogeny and evolutionary history of the Lesion Simulating Disease (LSD) gene family in Viridiplantae.

Identifieur interne : 001A99 ( Main/Exploration ); précédent : 001A98; suivant : 001B00

The phylogeny and evolutionary history of the Lesion Simulating Disease (LSD) gene family in Viridiplantae.

Auteurs : Caroline Cabreira [Brésil] ; Alexandro Cagliari [Brésil] ; Lauro Bücker-Neto [Brésil] ; Márcia Margis-Pinheiro [Brésil] ; Loreta B. De Freitas [Brésil] ; Maria Helena Bodanese-Zanettini [Brésil]

Source :

Molecular genetics and genomics : MGG [ 1617-4623 ] ; 2015.

RBID : pubmed:25982742

Descripteurs français

KwdFr :
- Cartographie chromosomique (MeSH), Données de séquences moléculaires (MeSH), Gènes de plante (MeSH), Maladies des plantes (génétique), Phylogenèse (MeSH), Protéines végétales (composition chimique), Protéines végétales (métabolisme), Similitude de séquences d'acides aminés (MeSH), Structure secondaire des protéines (MeSH), Séquence d'acides aminés (MeSH), Viridiplantae (génétique), Viridiplantae (métabolisme), Évolution moléculaire (MeSH).
MESH :
- composition chimique : Protéines végétales.
- génétique : Maladies des plantes, Viridiplantae.
- métabolisme : Protéines végétales, Viridiplantae.
- Cartographie chromosomique, Données de séquences moléculaires, Gènes de plante, Phylogenèse, Similitude de séquences d'acides aminés, Structure secondaire des protéines, Séquence d'acides aminés, Évolution moléculaire.

English descriptors

KwdEn :
- Amino Acid Sequence (MeSH), Chromosome Mapping (MeSH), Evolution, Molecular (MeSH), Genes, Plant (MeSH), Molecular Sequence Data (MeSH), Phylogeny (MeSH), Plant Diseases (genetics), Plant Proteins (chemistry), Plant Proteins (metabolism), Protein Structure, Secondary (MeSH), Sequence Homology, Amino Acid (MeSH), Viridiplantae (genetics), Viridiplantae (metabolism).
MESH :
- chemical , chemistry : Plant Proteins.
- genetics : Plant Diseases, Viridiplantae.
- chemical , metabolism : Plant Proteins, Viridiplantae.
- Amino Acid Sequence, Chromosome Mapping, Evolution, Molecular, Genes, Plant, Molecular Sequence Data, Phylogeny, Protein Structure, Secondary, Sequence Homology, Amino Acid.

Abstract

The Lesion Simulating Disease (LSD) genes encode a family of zinc finger proteins that play a role in programmed cell death (PCD) and other biological processes, such as plant growth and photosynthesis. In the present study, we report the reconstruction of the evolutionary history of the LSD gene family in Viridiplantae. Phylogenetic analysis revealed that the monocot and eudicot genes were distributed along the phylogeny, indicating that the expansion of the family occurred prior to the diversification between these clades. Sequences encoding proteins that present one, two, or three LSD domains formed separate groups. The secondary structure of these different LSD proteins presented a similar composition, with the β-sheets being their main component. The evolution by gene duplication was identified only to the genes that contain three LSD domains, which generated proteins with equal structure. Moreover, genes encoding proteins with one or two LSD domains evolved as single-copy genes and did not result from loss or gain in LSD domains. These results were corroborated by synteny analysis among regions containing paralogous/orthologous genes in Glycine max and Populus trichocarpa. The Ka/Ks ratio between paralogous/orthologous genes revealed that a subfunctionalization process possibly could be occurring with the LSD genes, explaining the involvement of LSD members in different biological processes, in addition to the negative regulation of PCD. This study presents important novelty in the evolutionary history of the LSD family and provides a basis for future research on individual LSD genes and their involvement in important pathway networks in plants.

DOI: 10.1007/s00438-015-1060-4
PubMed: 25982742

Affiliations:

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Le document en format XML

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<term>Chromosome Mapping (MeSH)</term>
<term>Evolution, Molecular (MeSH)</term>
<term>Genes, Plant (MeSH)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Diseases (genetics)</term>
<term>Plant Proteins (chemistry)</term>
<term>Plant Proteins (metabolism)</term>
<term>Protein Structure, Secondary (MeSH)</term>
<term>Sequence Homology, Amino Acid (MeSH)</term>
<term>Viridiplantae (genetics)</term>
<term>Viridiplantae (metabolism)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Cartographie chromosomique (MeSH)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Gènes de plante (MeSH)</term>
<term>Maladies des plantes (génétique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Protéines végétales (composition chimique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Similitude de séquences d'acides aminés (MeSH)</term>
<term>Structure secondaire des protéines (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
<term>Viridiplantae (génétique)</term>
<term>Viridiplantae (métabolisme)</term>
<term>Évolution moléculaire (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Plant Diseases</term>
<term>Viridiplantae</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Maladies des plantes</term>
<term>Viridiplantae</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Plant Proteins</term>
<term>Viridiplantae</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Protéines végétales</term>
<term>Viridiplantae</term>
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<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Chromosome Mapping</term>
<term>Evolution, Molecular</term>
<term>Genes, Plant</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
<term>Protein Structure, Secondary</term>
<term>Sequence Homology, Amino Acid</term>
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<keywords scheme="MESH" xml:lang="fr"><term>Cartographie chromosomique</term>
<term>Données de séquences moléculaires</term>
<term>Gènes de plante</term>
<term>Phylogenèse</term>
<term>Similitude de séquences d'acides aminés</term>
<term>Structure secondaire des protéines</term>
<term>Séquence d'acides aminés</term>
<term>Évolution moléculaire</term>
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<front><div type="abstract" xml:lang="en">The Lesion Simulating Disease (LSD) genes encode a family of zinc finger proteins that play a role in programmed cell death (PCD) and other biological processes, such as plant growth and photosynthesis. In the present study, we report the reconstruction of the evolutionary history of the LSD gene family in Viridiplantae. Phylogenetic analysis revealed that the monocot and eudicot genes were distributed along the phylogeny, indicating that the expansion of the family occurred prior to the diversification between these clades. Sequences encoding proteins that present one, two, or three LSD domains formed separate groups. The secondary structure of these different LSD proteins presented a similar composition, with the β-sheets being their main component. The evolution by gene duplication was identified only to the genes that contain three LSD domains, which generated proteins with equal structure. Moreover, genes encoding proteins with one or two LSD domains evolved as single-copy genes and did not result from loss or gain in LSD domains. These results were corroborated by synteny analysis among regions containing paralogous/orthologous genes in Glycine max and Populus trichocarpa. The Ka/Ks ratio between paralogous/orthologous genes revealed that a subfunctionalization process possibly could be occurring with the LSD genes, explaining the involvement of LSD members in different biological processes, in addition to the negative regulation of PCD. This study presents important novelty in the evolutionary history of the LSD family and provides a basis for future research on individual LSD genes and their involvement in important pathway networks in plants. </div>
</front>
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<DateCompleted><Year>2016</Year>
<Month>03</Month>
<Day>01</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
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<Issue>6</Issue>
<PubDate><Year>2015</Year>
<Month>Dec</Month>
</PubDate>
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<Title>Molecular genetics and genomics : MGG</Title>
<ISOAbbreviation>Mol Genet Genomics</ISOAbbreviation>
</Journal>
<ArticleTitle>The phylogeny and evolutionary history of the Lesion Simulating Disease (LSD) gene family in Viridiplantae.</ArticleTitle>
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</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1007/s00438-015-1060-4</ELocationID>
<Abstract><AbstractText>The Lesion Simulating Disease (LSD) genes encode a family of zinc finger proteins that play a role in programmed cell death (PCD) and other biological processes, such as plant growth and photosynthesis. In the present study, we report the reconstruction of the evolutionary history of the LSD gene family in Viridiplantae. Phylogenetic analysis revealed that the monocot and eudicot genes were distributed along the phylogeny, indicating that the expansion of the family occurred prior to the diversification between these clades. Sequences encoding proteins that present one, two, or three LSD domains formed separate groups. The secondary structure of these different LSD proteins presented a similar composition, with the β-sheets being their main component. The evolution by gene duplication was identified only to the genes that contain three LSD domains, which generated proteins with equal structure. Moreover, genes encoding proteins with one or two LSD domains evolved as single-copy genes and did not result from loss or gain in LSD domains. These results were corroborated by synteny analysis among regions containing paralogous/orthologous genes in Glycine max and Populus trichocarpa. The Ka/Ks ratio between paralogous/orthologous genes revealed that a subfunctionalization process possibly could be occurring with the LSD genes, explaining the involvement of LSD members in different biological processes, in addition to the negative regulation of PCD. This study presents important novelty in the evolutionary history of the LSD family and provides a basis for future research on individual LSD genes and their involvement in important pathway networks in plants. </AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Cabreira</LastName>
<ForeName>Caroline</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>Departamento de Genética, Programa de Pós-Graduação em Genética e Biologia Molecular, Universidade Federal do Rio Grande do Sul (UFRGS), PO Box 15053, Porto Alegre, RS, CEP 91501-970, Brazil.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Cagliari</LastName>
<ForeName>Alexandro</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Universidade Estadual do Rio Grande do Sul (UERGS), Santa Cruz do Sul, RS, Brazil.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Bücker-Neto</LastName>
<ForeName>Lauro</ForeName>
<Initials>L</Initials>
<AffiliationInfo><Affiliation>Departamento de Genética, Programa de Pós-Graduação em Genética e Biologia Molecular, Universidade Federal do Rio Grande do Sul (UFRGS), PO Box 15053, Porto Alegre, RS, CEP 91501-970, Brazil.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Margis-Pinheiro</LastName>
<ForeName>Márcia</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Departamento de Genética, Programa de Pós-Graduação em Genética e Biologia Molecular, Universidade Federal do Rio Grande do Sul (UFRGS), PO Box 15053, Porto Alegre, RS, CEP 91501-970, Brazil.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>de Freitas</LastName>
<ForeName>Loreta B</ForeName>
<Initials>LB</Initials>
<AffiliationInfo><Affiliation>Departamento de Genética, Programa de Pós-Graduação em Genética e Biologia Molecular, Universidade Federal do Rio Grande do Sul (UFRGS), PO Box 15053, Porto Alegre, RS, CEP 91501-970, Brazil.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Bodanese-Zanettini</LastName>
<ForeName>Maria Helena</ForeName>
<Initials>MH</Initials>
<AffiliationInfo><Affiliation>Departamento de Genética, Programa de Pós-Graduação em Genética e Biologia Molecular, Universidade Federal do Rio Grande do Sul (UFRGS), PO Box 15053, Porto Alegre, RS, CEP 91501-970, Brazil. maria.zanettini@ufrgs.br.</Affiliation>
</AffiliationInfo>
</Author>
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<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2015</Year>
<Month>05</Month>
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The phylogeny and evolutionary history of the Lesion Simulating Disease (LSD) gene family in Viridiplantae.

The phylogeny and evolutionary history of the Lesion Simulating Disease (LSD) gene family in Viridiplantae.

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